How Ancient Viruses Adapted to Climate Change
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Chapter 1: The Role of Glaciers in Climate History
As human activities continue to impact the planet's climate and ecosystems, scientists are turning to historical data to forecast potential outcomes of climate change. Glaciers, often referred to as nature’s freezers, serve as essential archives, preserving intricate records of past climates and ecosystems, including viral communities.
Our team, comprised of microbiologists and paleoclimatologists, investigates ancient microorganisms, particularly viruses, that are embedded in glacial ice. Collaborating with esteemed colleagues like Lonnie Thompson and Virginia Rich at The Ohio State University’s Ice Core Paleoclimatology group, we delve into the relationships between viruses and their environments using ice cores from the Guliya Glacier located on the Tibetan Plateau. Our latest research, which links ancient viral genomes to specific climate conditions locked in the ice, provides insights into how these viruses have adjusted to Earth’s climate fluctuations over the last 41,000 years.
Chapter 2: Uncovering Viral Histories
To reconstruct viral genomes from the Guliya ice core, we utilized metagenomes—comprehensive collections of the genetic material from all microorganisms found in environmental samples. This analysis covered nine distinct time frames, corresponding to three significant cold-to-warm transitions, allowing us to observe how viral communities adapted to varying climatic conditions.
Our research revealed the genomes of 1,705 different virus species, significantly increasing the known glacier-preserved ancient viral diversity by more than 50 times. Notably, only around 25% of these viral species shared similarities with any previously identified viruses from nearly 1,000 global metagenomes. Most of the overlapping viruses originated from the Tibetan Plateau, indicating that a portion of the viruses found in the Guliya Glacier may be local, while also highlighting the scarcity of glacial viruses in existing databases.
Through this new genomic data, we aimed to decipher the stories behind these ancient viruses. One of our primary discoveries was the significant variation in viral communities between cold and warm periods. The most distinctive group of viral species emerged roughly 11,500 years ago, aligning with the transition from the Last Glacial Stage to the Holocene epoch. This observation suggests that the unique climatic conditions during these periods played a crucial role in shaping the composition of viral communities, likely influenced by changes in wind patterns and temperature.
Section 2.1: Interactions Between Viruses and Hosts
To deepen our understanding, we analyzed how these viruses interacted with their microbial hosts. By employing computational models, we compared viral genomes with those of other microorganisms found in the same environment. We discovered that viruses frequently infected Flavobacterium, a common bacterial lineage in glacial ecosystems.
Our findings also indicated that viruses on the Guliya Glacier must acquire genes from their hosts to manipulate their metabolic processes. We identified 50 auxiliary metabolic genes within the viral genomes that are essential for various metabolic functions, including the synthesis and degradation of vitamins, amino acids, and carbohydrates. The persistence of some of these genes across all nine time intervals suggests they play a role in helping microbial hosts endure the harsh conditions of glacial surfaces, thereby enhancing viral fitness.
Thus, these viruses not only infect and destroy cells but also potentially modify their hosts' fitness, which in turn influences their survival capabilities in extreme glacial environments.
Chapter 3: Insights for Future Research
Our research offers a fresh perspective on how viral life forms have responded to climatic changes over millennia. Understanding these ancient viral-host interactions opens up new avenues for research in both virology and climate science. By examining how ancient viruses have adapted to historical climate changes, scientists can glean valuable insights into how viruses might respond to contemporary global climate challenges.
We contend that glacier ice, with its ability to capture microorganisms and their ecosystems across time, remains an invaluable resource for uncovering Earth’s climatic history and the life it has sustained—particularly as glacier reserves diminish at an alarming rate.
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Funding Acknowledgements
Zhi-Ping Zhong is supported by the Byrd Postdoctoral Fellowship, Heising-Simons Foundation, National Science Foundation, Gordon and Betty Moore Foundation, and the U.S. Department of Energy’s Joint Genome Institute. Ellen Mosley-Thompson receives funding from the Heising-Simons Foundation. Lonnie Thompson is funded by the National Science Foundation, Chinese Academy of Sciences, and Heising-Simons Foundation. Matthew Sullivan is supported by the Gordon and Betty Moore Foundation and the U.S. Department of Energy. Virginia Rich is funded by the Heising-Simons Foundation.